ChEMBL-MCP-Server

@BioMCP-Hub

About ChEMBL-MCP-Server

No overview available yet

Config

Add this server to your MCP-compatible client using the configuration below.

{
  "mcpServers": {
    "chembl-mcp-server-biomcp-hub": {
      "command": "python",
      "args": [
        "chembl_searver.py"
      ]
    }
  }
}

Tools

No tools detected

We auto-extract tools from the README. The maintainer can list them under a ## Tools heading to populate this section.

Overview

What is ChEMBL-MCP-Server?

A FastMCP wrapper server based on the chembl_webresource_client package, providing API access to the ChEMBL database.

How to use ChEMBL-MCP-Server?

Clone the repository, install dependencies with pip install -r requirements.txt, then start the server using python chembl_searver.py. Configure it via command-line parameters such as --host, --port, --transport (http or stdio), and --log-level.

Key features of ChEMBL-MCP-Server

Complete API access to the ChEMBL database
Asynchronous API calls implemented using FastMCP framework
Built-in error handling and timeout mechanisms
Support for both HTTP and stdio transport methods
Complete type annotations and docstrings
Data entity APIs (activity, assay, target, molecule, drug, and more)
Chemical tool APIs (SMILES canonicalization, conversion, structural alerts)

Use cases of ChEMBL-MCP-Server

Retrieving activity, assay, target, molecule, or drug data from ChEMBL
Canonicalizing SMILES strings or converting SMILES to InChI/SVG
Querying structural alerts for chemical compounds
Integrating ChEMBL data into MCP-compatible workflows

FAQ from ChEMBL-MCP-Server

What does the ChEMBL-MCP-Server do?

It wraps the ChEMBL web resource client into a FastMCP server for asynchronous API access.

How do I install the server?

Clone the repository and run pip install -r requirements.txt.

How do I start the server?

Run python chembl_searver.py with optional parameters like --host, --port, --transport, and --log-level.

What transport methods are supported?

HTTP and stdio transports are supported. Default is HTTP.

What dependencies are required?

The server requires chembl_webresource_client, mcp, fastapi, uvicorn, and asyncio.

Frequently asked questions

What does the ChEMBL-MCP-Server do?

It wraps the ChEMBL web resource client into a FastMCP server for asynchronous API access.

How do I install the server?

Clone the repository and run `pip install -r requirements.txt`.

How do I start the server?

Run `python chembl_searver.py` with optional parameters like `--host`, `--port`, `--transport`, and `--log-level`.

What transport methods are supported?

HTTP and stdio transports are supported. Default is HTTP.

What dependencies are required?

The server requires chembl_webresource_client, mcp, fastapi, uvicorn, and asyncio.

Comments

Basic information

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