What is a #bioinformatics MCP server?
An MCP server tagged #bioinformatics implements the Model Context Protocol so AI assistants like Claude, Cursor, and VS Code can access bioinformatics-related tools, data, or APIs.
20 #bioinformatics MCP Servers & Clients
Every MCP server and client below is tagged #bioinformatics — install one to give Claude, Cursor, VS Code, or any other MCP-compatible client access to bioinformatics tools.
All
BioMCP: Biomedical Model Context Protocol
genomoncology
BioMCP: Biomedical Model Context Protocol
Added last year
Encode Toolkit
ammawla
MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments
Added 5 months ago
biothings-mcp
longevity-genie
MCP (Model Context Protocol) server for biothings
Added last year
Pdb Mcp Server
Augmented-Nature
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.
Added last year
BioRxiv MCP Server
JackKuo666
🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.
Added last year
Unofficial UniProt MCP Server
Augmented-Nature
A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.
Added last year
GWAS Catalog MCP Server
koido
Added last year
Bioconda-MCP-Server
JackKuo666
Added last year
CM
ChemBL MCP Server
EazyAl
Added last year
🧬 Ensembl API MCP Server
effieklimi
A full-featured Model Context Protocol (MCP) server that exposes Ensembl’s REST API. Built using the TypeScript MCP SDK
Added last year
Unofficial Ensembl MCP Server
Augmented-Nature
A comprehensive Model Context Protocol (MCP) server that provides access to the Ensembl REST API for genomic data, comparative genomics, and biological annotations.
Added last year
RP
Ranomics Platform
leowan7
Wet-lab triage for AI binder-design agents. Submit computational protein designs, get back yeast-display enrichment and called hits.
Added 2 months ago
bio-mcp-servers
kleonai
A compilation for all the available bio agent
Added last year
C
Chatspatial
cafferychen777
Natural language-driven spatial transcriptomics analysis via MCP. Integrates 60+ analytical methods across 15 categories including preprocessing, visualization, spatial statistics, cell communication, deconvolution, and trajectory analysis.
Added 7 months ago
longevity-mcp
longevity-genie
Bio MCP server that deals with longevity databases (open-genes, genage and so on)
Added last year
GM
gnomAD MCP Server
koido
This MCP server provides a programmatic interface to the Genome Aggregation Database (gnomAD) API, supporting multiple API versions (v2.1.1, v3.1.2, v4.1.0).
Added last year
B
Biomcp
gucci10248
50+ biomedical databases unified behind one MCP
Added last month
Liftover MCP server
koido
Added last year
AM
Alphafold Mcp Server
Augmented-Nature
A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structure prediction analysis.
Added last year
biostudies-mcp-server
EBIBioStudies
Added last year
Frequently asked questions
Common questions about MCP servers and clients tagged #bioinformatics
How many #bioinformatics MCP servers and clients are there?
mcp.so currently lists 20 MCP servers and clients tagged #bioinformatics.
How do I install a #bioinformatics MCP server?
Open any server below and copy its install snippet into Claude Desktop, Cursor, VS Code, or another MCP client's configuration — remote servers need no separate download.